PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC683_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 328aa    MW: 36053.9 Da    PI: 4.9176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC683_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20115164255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r+++ +g+W+AeIrdp+e    +r++lg+f taeeAa+a++aa+++++g
  RrC683_p3 115 QYRGIRQRP-WGKWAAEIRDPKE---GARIWLGTFSTAEEAARAYDAAARRIRG 164
                69*******.**********966...3*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.80E-18115173No hitNo description
PROSITE profilePS5103224.46115172IPR001471AP2/ERF domain
SMARTSM003806.7E-38115178IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22115174IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-33115173IPR001471AP2/ERF domain
PRINTSPR003678.5E-12116127IPR001471AP2/ERF domain
PfamPF008472.8E-13116164IPR001471AP2/ERF domain
PRINTSPR003678.5E-12138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MCGGAIISDF IPSSKSRRVT SEFIWPDLKK KKKNAKGLKK SLEKRSSHSD LDDEFEADFQ  60
RFKDDLSVDG DDVFDDVFAD VKPLVSTAVS SAAAACGKKV ADSNGQAAKR KRKNQYRGIR  120
QRPWGKWAAE IRDPKEGARI WLGTFSTAEE AARAYDAAAR RIRGSKAKVN FPVESLTFSQ  180
KPVAKPNPNL ASVQNFDNMG FMEDTEQGNN NNNNSQFALT NSIDAGGGNG YHQYFSSDQG  240
SNSFGWSDQA PITPEISSAF INNNNSALFV EDANPAKKLK SMDFEAPQWD SSLDFLSGDA  300
VVTEDNGENP MDLLWSIDEI ESMIGGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23115173261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12839KKKKKNAKGLKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001077718.11e-133ethylene-responsive transcription factor RAP2-12
SwissprotQ9SSA81e-134RA212_ARATH; Ethylene-responsive transcription factor RAP2-12
TrEMBLA8MRC01e-133A8MRC0_ARATH; Ethylene-responsive transcription factor RAP2-12
STRINGAT1G53910.11e-131(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-111related to AP2 12